PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005269.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 407aa    MW: 44671.3 Da    PI: 9.0316
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005269.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-1671130155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Do005269.1  71 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 130
                 789******************888855666447*************************98 PP

2AP251.32.9e-16173224155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Do005269.1 173 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 224
                 89****************99966...3.6***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1271130IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1671139IPR016177DNA-binding domain
SMARTSM003801.1E-2472144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-1672139IPR001471AP2/ERF domain
PROSITE profilePS5103219.80972138IPR001471AP2/ERF domain
PfamPF008473.7E-11173224IPR001471AP2/ERF domain
CDDcd000183.44E-23173232No hitNo description
SuperFamilySSF541712.62E-17173233IPR016177DNA-binding domain
SMARTSM003801.7E-26174238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17174232IPR001471AP2/ERF domain
PROSITE profilePS5103218.979174232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MENLMMVKSE IESYAGPAAP AVAIGAPEGG EATQVVRRRR REPALLAPIG GAANGSGIGK  60
PMPSITVKRS SRFRGVSRHR WTGRFEAHLW DKNSWNPTQR KKGKQVYLGA YDEEEAAARA  120
YDLAALKYWG PTTYTNFPVM DYEKELKIME NLTKEEYLAS LRRKSSGFSR GVSKYRGVAR  180
HHQNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYKGVNAVTN FDLRSYITWL  240
KPRPSAPVTF NPEALMMQAT PAELLLPAEA QMLPRGNPFL LDHINASPAG SSGGGQEASM  300
MSLSPGGVRK RGSPTALSLL LKSSMFRQLV EKNSDAEEAG GLGIREAAAA HPEAYEYHNF  360
FQGGDAPDMC DLFSSGGNGG FQGEIACYDD GERLENWSGF GNMSSLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961382.10.0PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y64e-92WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3Z6L70.0K3Z6L7_SETIT; Uncharacterized protein
STRINGSi022186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-80AP2 family protein